Field of Science

Showing posts with label comic. Show all posts
Showing posts with label comic. Show all posts

The thoughts of Aurigamonas

While literature surfing again, came across this adorable little cercozoan:

Aurigamonas solis. Diminutive amoeboflagellate, ambitious apetite. Seems to be a common theme in the protist world... (Vickerman et al. 2005 Protist)

That diagram was desperately asking for something to be done. It had to be. And so I did it:

True story: the phagocytic vacuole together with the nucleus express the cell's emotions. But seriously, why would it attack something so big and so armoured!? (Hope the authors wouldn't mind too much someone mutilating their drawings like that...)

On a more serious note, Aurigamonas seem very interesting in terms of cell structure:

The cell is biflagellated with multitudes of haptopodia sticking out and capped by haptosomes. The diagram shows them in varying stages of development (1-5). pno - paranuclear organelle (looks interesting!), cv - contractile vacuoles, sv - spicule-containing vacuoles, mt - microtubule rootlet system (reduced), m - mitochondrion, tv - thick-membraned vesicle. (Vickerman et al. 2005 Protist)

Don't you just wanna dangle this one by its 'tail'?

Phylomon, Protémon and "5 favourite organisms" meme

David Ng writes about the sad state of biodiversity/biology/nature education of kids when they obsess over fantasy instead, being unsatiated by what they know of the real world; this manifests itself in the form of Pokémon, etc. As a counter"attack", he suggests making Pokémon-esque Phylomon cards, perhaps eventually ending up with game-like rules and a way to reach out and educate children about the awesome diversity that exists far beyond the meagre attempts of human imagination. (ok, the hyperbolic assertions are my take). I think that would be awesome, especially if we could focus more on the world we cannot see so easily -- namely the microbes, aliens from a different scale.

A while ago my friend and I were discussing something similar, and 'Protémon' popped into my head. Yes, we could make a card collection/battle game starring various protists as characters. After all, since evolution has been around way longer than H.sapiens, its 'imaginative power' has expanded far beyond our own in that time. Of course 'intelligent design' via still-limited forsight can give an edge in creativity over non-human (ie non-cultural/linguistic) evolution, the damn thing's got about 3.0-3.5 billion years on us; there's still no way we could ever win!

Meanwhile, I randomly threw together this doodle in about 20min: fantasy anime videogame meet protistology. I swear no exogenous hallucinogenic chemicals were involved in this piece; the endogenous ones suffice, apparently...

Actually, in this particular screencap our protagonist is apparently ignoring the minor crap and charging straight at the boss: Cavalier-Smith 2006 Biol Direct (to the left of the drawing...)

I have class in 8h... Wish I had the speed-enhancing Stylonychia(-ish) protémon in real life to help me get to that class. Or a flying alarm clock shaped like Troglocorys. Damn I wish I were only ~100μm tall. On a second thought, maybe not...

And David Ng wants us to form a meme around his post:
"think of your five favourite organisms and why, suggest it for the Phylomon art community and pass it on?"
So consider yourselves tagged!

Ok, I'll do this one: (note, subject to change; I don't really have favourites, except for the first one)
1. Erythropsidinium (and other Warnowiid dinoflagellates) -- Unicellular dinoflagellate with a fucking IMAGE-FORMING CAMERA EYE. Need I say more?

2. Oxytricha (ciliate) -- Complicated bi-nucleate genome system, scrambled genes, complex morphogenesis, 'walks' and also really cute!

3. Saccinobaculus (oxymonad) -- It moves by thrashing around it's internal bundle of microtubules (axostyle), inside itself. Snake-in-a-bag. See clip in this post

4a. Myxomycetes -- plasmodial slime moulds. Although to be honest, they can easily compete with Dicty[ostelium; a cellular slime mould], but something about a large multinucleate-yet-unicellular thing of bright goop is just awesome, despite having seen plenty of

4b. Phaeodarians -- (couldn't pick between these two) Go to Coelodiceras. Now, imagine the living organism -- a giant spikey ball of axopodia, sucking in and devouring anything they can touch, including small metazoans (eg. copepods). Oh, did I mention this thing is unicellular, and uninucleate? And big?

5. Arabidopsis -- It feeds me and pays my bills. Also, I'm still a cell/developmental biologist, I swear!

Now what are yours?

A new low: anime "Erythrops"

Oh my FSM, what have I created?

Erythrops the [cyclopsoid] Erythropsidinium. Now I gotta dig up that Greuet 1977 paper again to see if this looks a bit less awkward in mitosis... I mean, uhhh, focus on my classes and study my biochem notes. Yeah. That.

Hey, when they realise their mistake and kick me out of academia, I can totally become a protist comic artist! Now that's a job in high demand out in the real world...

As for Sunday Protist, I'm waiting for a certain someone to reappear online and remedy his guess. We're a bit low on Dalhousie traffic lately... I'm looking at you, Ancyromonas geek!

Anyway, class in 7.5h... totally gonna attend it! Nothing! can be more fun and exciting! than 8am! biochem! Wheeee! Yay!

100th post!

100th post, yay! Time for something silly, to celebrate:

Let's meet our new mascots, Cer Ratium (pun avoidance order in effect) and [insert witty name here] the Protoperidinium:

(ARGH my shitty computer just can't handle the elite memory whore that is ImageJ...)

Cer Ratium has a special attack: for the anime geeks among us, remember Lust from Fullmetal Alchemist? Yeah... this thing is gonna grow unrealistically long finger[nail] things to pierce opponents with...

And Protoperidinium ("Protoper"?) has this epic pallium attack where it casts a pseudopodious veil upon its opponents and digests them. Size advantages are useless against this one!

And now some of the other cast members: (mostly borne of lecture note margin doodles...)

Left -> right: T-phage riding E.coli, Psi, perpetually hammered EtOH, Partial [derivative], hNu, perpetually abused Neuron, a couple dimensions (R3 with the Projection Lance, mwahaha), Caffeine, cute lil' Kinesin and Dynein chillin on a 'tube (microtubule)... Dynein is holding up a clathrin-coated vesicle.

("Эх, прокачу!" is a reference to a Russian novel, Золотой Телёнок...)

Note: I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd. I am not a nerd...

The story of Psi, and why I blog under a pseudonym

Some people may be wondering why the hell I'm posting under a pseudonym; and why, of all things, 'Psi Wavefunction'?

First off, a brief story of Psi:
'twas the night before my first physics final, while I was still innocent and optimistic about the whole exam concept. I was so sure I was gonna totally pwn all my finals, since ass-kicking in highschool apparently implied intelligence or something, at the time. Pwnage did happen, but not in the expected direction. But I digress. I was stupid enough to sign up for a hard-core first year integrated sciences program, and thus our physics curriculum was on steroids. And crack. Also, said program was called 'Science One', and the symbol devised by prior students was an uppercase Ψ with the middle stroke being shaped like a 1. Quite fun to write.

We were playing around with Schroedinger's equations, with something about a wavefunction being like Ψ(x) = scary stuff I forgot by now. That was also a lot of fun to write. My friend down the hall was a comic artist, so I was kind of envious of the massive perpetual party hosted inside her head. So with exam stress building up, somehow a pair of eyes happened atop Ψ(x), and thus Psi Wavefunction, the Son of Schrö, was born.

I think he looks kinda cute. And yes, Psi thinks 'Sigh'. haha. Later, Partial, hNu, Neuron et al. came along, and I even had a few comic strips involving them, but sadly never got around to making any storyline with them, which would have been fun. Still, he got to live on as my internet alias. There is the inconvenience of being contacted by physicists thinking I'm one of their ilk, only to find out I fled from PHYS101 with flailing arms after the second time...

The most abstract (and therefore, cute-prone) geeky characters tend to come from physics and math, where the whole subject is fairly abstract. Biology is much harder to cutify, especially since adding humanoid eyes to other animals and beyond would be kinda weird. I do have some viruses surfing on E.coli somewhere though... (before I started doodling protists on my notes, it was cartoonified molecules and cells...)

Our prof mentioned that exonucleases were 'like pacman', and this is the horrible, horrible result.

I have no idea why 'Euglena has 4 chloroplasts' was mentioned, but that doesn't sound right at all... I can't find anything about 'four chloroplasts' in Euglena, and a quick image search reveals the statement to be rather questionable. This is what happens when a zoologist starts talking about protists... can you imagine making a statement like "Fish have 5 fins" and getting away with it? But making a similar statement about a 'lower eukaryote' is perfectly acceptable... but I digress again:

Since we're on the topic of classroom doodling, obligatory protist doodles:

Fun times... anyway, how did we get distracted from Psi?

Next topic: Why blog under a pseudonym?
Some people assume that writing under anonymity or a pseudonym is for propagating potentially offensive or insulting views while being safe from the repercussions. Sure, some people do take advantage of internet anonymity to act like total assholes without any consequences. And that's what free speech is all about anyway: it protects erudite ideas as well as vulgar obscenities and utterly moronic statements. The same goes for acting under an alias: sometimes it gets abused for flaming and spamming, sometimes it can be perfectly benign or even beneficial.

However, that's not really the reason I do it. I'm probably more upfront and aggressive in person, especially to those I know. Here I target my posts at strangers, so a fair bit of politeness comes out naturally. I generally refrain from referring to sub-par ideas here as 'totally fucking moronic', as it's not a particularly constructive form of discourse. In real life, however, it can be a perfectly acceptable and satisfying way to share your disagreements in certain circumstances, eg. with your friends.

One of the main reasons I use a pseudonym is in case a putative future employer accidentally chances upon this, and gets to know my blog before getting to know me in person. I'd like to be in modest control over how someone gets a first impression of myself, especially where it matters. While I don't write anything here I wouldn't say in real life, some of the stuff I wouldn't say in an interview. It feels like a blog post rids you of the ability to choose who gets to see it and in what context.

Also, since I don't currently work in the field of protistology, it feels awkward to write about it, especially with true experts on the prowl (literally, as I found out yesterday... hi there!). An undergrad isn't really supposed to keep a science blog, so I try to diffuse that little detail with an alias. That said, don't adjust standards accordingly: please let me know of any inaccuracies or outright bullshit!

Lastly, I'm trying to keep my department affiliations kind of hidden (and really failing at it...), just in case. I woudln't want to unintentionally embarass them by writing something stupid here, so it's best if the readership is for the most part unaware of who'd be insane enough to employ this freak =P


And one last note... in case it looks weird that I don't blog about my own research: I do find it fascinating and am dying to write about it, but the Arabidopsis field is quite competitive so it's best to keep scoopable material hidden until publication. I could write about some published works, but most of the stuff I read relates directly to our current work, and might give some ideas/clues to certain labs that have screwed us in the past. Not that there's any real probability of them showing up here of all places, but if it were to only happen once my boss (and labmates) would probably rip my head off and autoclave it. (Would that be Risk Group III?)

That said, I have gels to run and drugs to do... on my plants. Toodles~